Variant report
| Variant | rs7255034 |
|---|---|
| Chromosome Location | chr19:40079788-40079789 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | REST | chr19:40077888-40082568 | PANC-1 | pancreas: | n/a | chr19:40081090-40081098 chr19:40081098-40081112 chr19:40081097-40081106 chr19:40081092-40081112 chr19:40081092-40081101 chr19:40081092-40081112 chr19:40081093-40081111 chr19:40081092-40081105 chr19:40081092-40081112 |
| 2 | REST | chr19:40077888-40082618 | PANC-1 | pancreas: | n/a | chr19:40081090-40081098 chr19:40081098-40081112 chr19:40081097-40081106 chr19:40081092-40081112 chr19:40081092-40081101 chr19:40081092-40081112 chr19:40081093-40081111 chr19:40081092-40081105 chr19:40081092-40081112 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPS29P25 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10403625 | 0.85[EUR][1000 genomes] |
| rs10415807 | 0.88[EUR][1000 genomes] |
| rs1433109 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16973498 | 0.85[EUR][1000 genomes] |
| rs2010106 | 0.86[EUR][1000 genomes] |
| rs2082483 | 0.83[EUR][1000 genomes] |
| rs57484954 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs57713278 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58916238 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61288778 | 0.90[EUR][1000 genomes] |
| rs7248055 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72480723 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72480724 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7251429 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7260569 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73930747 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs8100675 | 0.86[EUR][1000 genomes] |
| rs8108805 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1060251 | chr19:39982988-40099773 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv579509 | chr19:40004640-40133438 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 3 | esv34120 | chr19:40044635-40131820 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
