Variant report

Variant	rs17796442
Chromosome Location	chr16:59584628-59584629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1482243	0.81[EUR][1000 genomes]
rs1482259	0.81[EUR][1000 genomes]
rs1482260	0.81[EUR][1000 genomes]
rs1564578	0.81[EUR][1000 genomes]
rs17258603	0.81[EUR][1000 genomes]
rs34924212	0.94[ASN][1000 genomes]
rs35037315	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6500044	0.81[EUR][1000 genomes]
rs6500045	0.81[EUR][1000 genomes]
rs6500046	0.81[EUR][1000 genomes]
rs8053483	0.80[EUR][1000 genomes]
rs8055541	0.81[EUR][1000 genomes]
rs8055877	0.81[EUR][1000 genomes]
rs8056271	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9888799	0.80[EUR][1000 genomes]
rs9888883	0.81[EUR][1000 genomes]
rs9936381	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906747	chr16:59385832-60172030	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv916423	chr16:59411801-59750824	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv572832	chr16:59578561-59756567	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17796442	ARL2BP	cis	cerebellum	SCAN
rs17796442	MT1L	cis	parietal	SCAN
rs17796442	MT1G	cis	parietal	SCAN
rs17796442	MT1M	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:59580200-59586400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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