Variant report
| Variant | rs8056271 |
|---|---|
| Chromosome Location | chr16:59587565-59587566 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1482243 | 0.83[EUR][1000 genomes] |
| rs1482259 | 0.82[EUR][1000 genomes] |
| rs1482260 | 0.83[EUR][1000 genomes] |
| rs1564578 | 0.83[EUR][1000 genomes] |
| rs17258603 | 0.83[EUR][1000 genomes] |
| rs17796442 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs31979 | 0.82[EUR][1000 genomes] |
| rs31980 | 0.80[EUR][1000 genomes] |
| rs31982 | 0.81[EUR][1000 genomes] |
| rs31983 | 0.81[EUR][1000 genomes] |
| rs31984 | 0.81[EUR][1000 genomes] |
| rs31985 | 0.81[EUR][1000 genomes] |
| rs31986 | 0.81[EUR][1000 genomes] |
| rs34924212 | 0.91[ASN][1000 genomes] |
| rs35037315 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs40286 | 0.81[EUR][1000 genomes] |
| rs6500044 | 0.82[EUR][1000 genomes] |
| rs6500045 | 0.82[EUR][1000 genomes] |
| rs6500046 | 0.82[EUR][1000 genomes] |
| rs8053483 | 0.81[EUR][1000 genomes] |
| rs8055541 | 0.83[EUR][1000 genomes] |
| rs8055877 | 0.83[EUR][1000 genomes] |
| rs8061867 | 0.81[EUR][1000 genomes] |
| rs9888799 | 0.81[EUR][1000 genomes] |
| rs9888883 | 0.82[EUR][1000 genomes] |
| rs9936381 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv906747 | chr16:59385832-60172030 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv916423 | chr16:59411801-59750824 | Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv572832 | chr16:59578561-59756567 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs8056271 | ARL2BP | cis | cerebellum | SCAN |
| rs8056271 | MT1G | cis | parietal | SCAN |
| rs8056271 | MT1M | cis | parietal | SCAN |
| rs8056271 | MT1L | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:59586800-59587800 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
