Variant report

Variant	rs17804238
Chromosome Location	chr7:79707387-79707388
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10486920	0.88[EUR][1000 genomes]
rs12530785	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535738	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12673179	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79695800-79707400	Weak transcription	Psoas Muscle	Psoas
2	chr7:79696800-79707400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:79700800-79707400	Weak transcription	Adipose Nuclei	Adipose
4	chr7:79701200-79707400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:79704800-79707400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:79704800-79707400	Weak transcription	Osteobl	bone
7	chr7:79705000-79707400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:79706000-79707400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:79707200-79707400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr7:79707200-79707400	Enhancers	Primary T cells from cord blood	blood
11	chr7:79707200-79707400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr7:79707200-79707400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:79707200-79707400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:79707200-79707400	Enhancers	Ovary	ovary
15	chr7:79707200-79707400	Enhancers	Hela-S3	cervix
16	chr7:79707200-79707400	Enhancers	HUVEC	blood vessel
17	chr7:79707200-79707400	Active TSS	Monocytes-CD14+_RO01746	blood
18	chr7:79707200-79707600	Enhancers	Brain Substantia Nigra	brain
19	chr7:79707200-79707800	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr7:79707200-79707800	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr7:79707200-79707800	Flanking Active TSS	Dnd41	blood
22	chr7:79707200-79708000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:79707200-79708000	Active TSS	Duodenum Mucosa	Duodenum
24	chr7:79707200-79708200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:79707200-79708400	Active TSS	Pancreatic Islets	Pancreatic Islet

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