Variant report
| Variant | rs10486920 |
|---|---|
| Chromosome Location | chr7:79694753-79694754 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10272435 | 0.84[ASN][1000 genomes] |
| rs10278055 | 0.86[ASN][1000 genomes] |
| rs1034721 | 0.84[ASN][1000 genomes] |
| rs10486917 | 0.84[ASN][1000 genomes] |
| rs12530785 | 0.92[EUR][1000 genomes] |
| rs12535738 | 0.92[EUR][1000 genomes] |
| rs12668303 | 0.86[ASN][1000 genomes] |
| rs12669805 | 0.82[ASN][1000 genomes] |
| rs12673179 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12673496 | 0.84[ASN][1000 genomes] |
| rs17153306 | 0.82[ASN][1000 genomes] |
| rs17153363 | 0.84[ASN][1000 genomes] |
| rs17804238 | 0.88[EUR][1000 genomes] |
| rs28607619 | 0.84[ASN][1000 genomes] |
| rs41488346 | 0.84[ASN][1000 genomes] |
| rs58310336 | 0.84[ASN][1000 genomes] |
| rs60238764 | 0.86[ASN][1000 genomes] |
| rs61364846 | 0.84[ASN][1000 genomes] |
| rs62460662 | 0.86[ASN][1000 genomes] |
| rs62460688 | 0.85[ASN][1000 genomes] |
| rs62460694 | 0.81[ASN][1000 genomes] |
| rs62461731 | 0.84[ASN][1000 genomes] |
| rs6964183 | 0.82[ASN][1000 genomes] |
| rs7798365 | 0.86[ASN][1000 genomes] |
| rs7808200 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv470344 | chr7:79659914-79701003 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv607678 | chr7:79665817-79726578 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1027494 | chr7:79693976-79760332 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10486920 | STYXL1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79690200-79696400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
