Variant report

Variant	rs60238764
Chromosome Location	chr7:79698750-79698751
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10272435	0.97[ASN][1000 genomes]
rs10278055	1.00[ASN][1000 genomes]
rs1034721	0.97[ASN][1000 genomes]
rs10486917	0.97[ASN][1000 genomes]
rs10486920	0.86[ASN][1000 genomes]
rs12668303	1.00[ASN][1000 genomes]
rs12669805	0.95[ASN][1000 genomes]
rs12673179	0.86[ASN][1000 genomes]
rs12673496	0.97[ASN][1000 genomes]
rs12673899	0.88[ASN][1000 genomes]
rs17153306	0.95[ASN][1000 genomes]
rs17153363	0.97[ASN][1000 genomes]
rs17153389	0.85[ASN][1000 genomes]
rs17153392	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2013085	0.88[ASN][1000 genomes]
rs28607619	0.97[ASN][1000 genomes]
rs41488346	0.97[ASN][1000 genomes]
rs58310336	0.97[ASN][1000 genomes]
rs61364846	0.97[ASN][1000 genomes]
rs62460662	1.00[ASN][1000 genomes]
rs62460688	0.98[ASN][1000 genomes]
rs62460693	0.93[ASN][1000 genomes]
rs62460694	0.94[ASN][1000 genomes]
rs62460697	0.88[ASN][1000 genomes]
rs62461731	0.97[ASN][1000 genomes]
rs6964183	0.95[ASN][1000 genomes]
rs715201	0.85[AMR][1000 genomes]
rs7798365	1.00[ASN][1000 genomes]
rs7808200	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79695800-79707400	Weak transcription	Psoas Muscle	Psoas
2	chr7:79696800-79707400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:79698400-79699600	Weak transcription	Small Intestine	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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