Variant report

Variant	rs17153306
Chromosome Location	chr7:79664885-79664886
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10272435	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10278055	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1034721	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486917	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10486920	0.82[ASN][1000 genomes]
rs12668303	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12669805	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12673179	0.82[ASN][1000 genomes]
rs12673496	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12673899	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17153215	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153363	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17153389	0.81[ASN][1000 genomes]
rs17153392	0.84[ASN][1000 genomes]
rs17208548	0.80[ASN][1000 genomes]
rs17802112	0.80[ASN][1000 genomes]
rs2013085	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28607619	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2886531	0.80[ASN][1000 genomes]
rs41488346	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4604374	1.00[EUR][1000 genomes]
rs57112658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58310336	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60238764	0.95[ASN][1000 genomes]
rs61364846	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62460661	0.84[EUR][1000 genomes]
rs62460662	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62460688	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62460690	0.92[EUR][1000 genomes]
rs62460691	0.92[EUR][1000 genomes]
rs62460693	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62460694	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs62460697	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62461707	0.80[ASN][1000 genomes]
rs62461710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62461731	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62461732	0.92[EUR][1000 genomes]
rs62461734	0.92[EUR][1000 genomes]
rs6964183	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6964495	0.85[EUR][1000 genomes]
rs715201	0.80[ASN][1000 genomes]
rs7798365	0.95[ASN][1000 genomes]
rs7803811	0.80[ASN][1000 genomes]
rs7808200	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79662800-79665000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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