Variant report

Variant	rs17208548
Chromosome Location	chr7:79647971-79647972
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12669805	0.80[ASN][1000 genomes]
rs17153215	0.97[ASN][1000 genomes]
rs17153306	0.80[ASN][1000 genomes]
rs17802047	0.89[EUR][1000 genomes]
rs17802112	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17802148	0.89[EUR][1000 genomes]
rs2040760	0.87[EUR][1000 genomes]
rs2886531	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34568037	0.89[EUR][1000 genomes]
rs57112658	0.99[ASN][1000 genomes]
rs62461707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62461708	0.89[EUR][1000 genomes]
rs62461710	1.00[ASN][1000 genomes]
rs62461712	0.86[EUR][1000 genomes]
rs62461713	0.87[EUR][1000 genomes]
rs6964183	0.80[ASN][1000 genomes]
rs715201	1.00[ASN][1000 genomes]
rs7803811	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79644000-79648000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:79644000-79648600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:79644200-79648200	Weak transcription	Osteobl	bone
4	chr7:79644400-79648400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:79644400-79648800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:79644600-79648200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:79644600-79648200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:79644600-79648400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:79647000-79648200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:79647600-79648400	Weak transcription	NHLF	lung
11	chr7:79647600-79648800	Enhancers	NHDF-Ad	bronchial
12	chr7:79647600-79649000	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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