Variant report

Variant	rs17802112
Chromosome Location	chr7:79632588-79632589
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12669805	0.80[ASN][1000 genomes]
rs17153215	0.97[ASN][1000 genomes]
rs17153306	0.80[ASN][1000 genomes]
rs17208548	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17802047	0.89[EUR][1000 genomes]
rs17802148	0.89[EUR][1000 genomes]
rs2040760	0.87[EUR][1000 genomes]
rs2886531	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34568037	0.89[EUR][1000 genomes]
rs57112658	0.99[ASN][1000 genomes]
rs62461707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62461708	0.89[EUR][1000 genomes]
rs62461710	1.00[ASN][1000 genomes]
rs62461712	0.86[EUR][1000 genomes]
rs62461713	0.87[EUR][1000 genomes]
rs6964183	0.80[ASN][1000 genomes]
rs715201	1.00[ASN][1000 genomes]
rs7803811	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79631600-79632800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:79631800-79632600	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr7:79631800-79633000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:79631800-79633000	Enhancers	NHLF	lung
5	chr7:79632000-79632600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:79632000-79632600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:79632000-79633200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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