Variant report

Variant	rs715201
Chromosome Location	chr7:79644245-79644246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12669805	0.80[ASN][1000 genomes]
rs17153215	0.97[ASN][1000 genomes]
rs17153306	0.80[ASN][1000 genomes]
rs17153392	0.85[AMR][1000 genomes]
rs17208548	1.00[ASN][1000 genomes]
rs17802112	1.00[ASN][1000 genomes]
rs2886531	1.00[ASN][1000 genomes]
rs57112658	0.99[ASN][1000 genomes]
rs60238764	0.85[AMR][1000 genomes]
rs62461707	1.00[ASN][1000 genomes]
rs62461710	1.00[ASN][1000 genomes]
rs6964183	0.80[ASN][1000 genomes]
rs7803811	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79643400-79644400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:79643400-79644600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:79643600-79644400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr7:79643800-79644400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:79643800-79644400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:79643800-79644600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:79644000-79644400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:79644000-79644400	Enhancers	Dnd41	blood
9	chr7:79644000-79644600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:79644000-79648000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr7:79644000-79648600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:79644200-79648200	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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