Variant report
| Variant | rs7803811 |
|---|---|
| Chromosome Location | chr7:79631456-79631457 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs12669805 | 0.80[ASN][1000 genomes] |
| rs17153215 | 0.97[ASN][1000 genomes] |
| rs17153306 | 0.80[ASN][1000 genomes] |
| rs17208548 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17802047 | 0.88[EUR][1000 genomes] |
| rs17802112 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17802148 | 0.88[EUR][1000 genomes] |
| rs2040760 | 0.86[EUR][1000 genomes] |
| rs2886531 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34568037 | 0.88[EUR][1000 genomes] |
| rs57112658 | 0.99[ASN][1000 genomes] |
| rs62461707 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62461708 | 0.88[EUR][1000 genomes] |
| rs62461710 | 1.00[ASN][1000 genomes] |
| rs62461712 | 0.85[EUR][1000 genomes] |
| rs62461713 | 0.86[EUR][1000 genomes] |
| rs6964183 | 0.80[ASN][1000 genomes] |
| rs715201 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7803811 | GNAI1 | cis | cerebellum | SCAN |
| rs7803811 | FGL2 | cis | parietal | SCAN |
| rs7803811 | SNORA14A | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79628000-79631600 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
