Variant report
| Variant | rs17153215 |
|---|---|
| Chromosome Location | chr7:79631045-79631046 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10272435 | 0.92[EUR][1000 genomes] |
| rs10278055 | 0.92[EUR][1000 genomes] |
| rs1034721 | 1.00[EUR][1000 genomes] |
| rs10486917 | 1.00[EUR][1000 genomes] |
| rs12668303 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12669805 | 0.85[EUR][1000 genomes] |
| rs12673496 | 0.92[EUR][1000 genomes] |
| rs12673899 | 0.81[AMR][1000 genomes] |
| rs17153306 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17153363 | 0.92[EUR][1000 genomes] |
| rs17208548 | 0.97[ASN][1000 genomes] |
| rs17802112 | 0.97[ASN][1000 genomes] |
| rs2013085 | 0.81[AMR][1000 genomes] |
| rs28607619 | 0.92[EUR][1000 genomes] |
| rs2886531 | 0.97[ASN][1000 genomes] |
| rs41488346 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4604374 | 1.00[EUR][1000 genomes] |
| rs57112658 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs58310336 | 1.00[EUR][1000 genomes] |
| rs61364846 | 1.00[EUR][1000 genomes] |
| rs62460661 | 0.84[EUR][1000 genomes] |
| rs62460662 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62460688 | 0.92[EUR][1000 genomes] |
| rs62460690 | 0.92[EUR][1000 genomes] |
| rs62460691 | 0.92[EUR][1000 genomes] |
| rs62460693 | 0.81[AMR][1000 genomes] |
| rs62460694 | 0.81[AMR][1000 genomes] |
| rs62460697 | 0.81[AMR][1000 genomes] |
| rs62461707 | 0.97[ASN][1000 genomes] |
| rs62461710 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs62461731 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs62461732 | 0.92[EUR][1000 genomes] |
| rs62461734 | 0.92[EUR][1000 genomes] |
| rs6964183 | 0.85[EUR][1000 genomes] |
| rs6964495 | 0.85[EUR][1000 genomes] |
| rs715201 | 0.97[ASN][1000 genomes] |
| rs7803811 | 0.97[ASN][1000 genomes] |
| rs7808200 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79628000-79631600 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
