Variant report

Variant	rs4604374
Chromosome Location	chr7:79645357-79645358
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10272435	0.92[EUR][1000 genomes]
rs10278055	0.92[EUR][1000 genomes]
rs1034721	1.00[EUR][1000 genomes]
rs10486917	1.00[EUR][1000 genomes]
rs12668303	0.92[EUR][1000 genomes]
rs12669805	0.85[EUR][1000 genomes]
rs12673496	0.92[EUR][1000 genomes]
rs17153215	1.00[EUR][1000 genomes]
rs17153306	1.00[EUR][1000 genomes]
rs17153363	0.92[EUR][1000 genomes]
rs28607619	0.92[EUR][1000 genomes]
rs41488346	0.92[EUR][1000 genomes]
rs57112658	1.00[EUR][1000 genomes]
rs58310336	1.00[EUR][1000 genomes]
rs61364846	1.00[EUR][1000 genomes]
rs62460661	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62460662	0.92[EUR][1000 genomes]
rs62460688	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62460689	1.00[AMR][1000 genomes]
rs62460690	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62460691	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62460692	1.00[AMR][1000 genomes]
rs62460695	1.00[AMR][1000 genomes]
rs62460696	1.00[AMR][1000 genomes]
rs62460698	1.00[AMR][1000 genomes]
rs62460699	1.00[AMR][1000 genomes]
rs62460701	1.00[AMR][1000 genomes]
rs62461710	1.00[EUR][1000 genomes]
rs62461731	0.92[EUR][1000 genomes]
rs62461732	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62461734	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6964183	0.85[EUR][1000 genomes]
rs6964495	0.85[EUR][1000 genomes]
rs7808200	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79644000-79648000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:79644000-79648600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:79644200-79648200	Weak transcription	Osteobl	bone
4	chr7:79644400-79647600	Weak transcription	Dnd41	blood
5	chr7:79644400-79648400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr7:79644400-79648800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:79644600-79648200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:79644600-79648200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:79644600-79648400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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