Variant report

Variant	rs62460698
Chromosome Location	chr7:79711575-79711576
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12673899	0.85[EUR][1000 genomes]
rs17153389	1.00[EUR][1000 genomes]
rs17153421	0.92[EUR][1000 genomes]
rs2013085	1.00[EUR][1000 genomes]
rs4604374	1.00[AMR][1000 genomes]
rs62460661	1.00[AMR][1000 genomes]
rs62460688	1.00[AMR][1000 genomes]
rs62460689	1.00[AMR][1000 genomes]
rs62460690	1.00[AMR][1000 genomes]
rs62460691	1.00[AMR][1000 genomes]
rs62460692	1.00[AMR][1000 genomes]
rs62460693	0.92[EUR][1000 genomes]
rs62460694	0.92[EUR][1000 genomes]
rs62460695	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62460696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62460697	1.00[EUR][1000 genomes]
rs62460699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62460701	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62460723	0.92[EUR][1000 genomes]
rs62461732	1.00[AMR][1000 genomes]
rs62461734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79707600-79716600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:79708000-79711600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:79708000-79716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:79708400-79716400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:79708400-79716800	Weak transcription	NHEK	skin
6	chr7:79710400-79712400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:79711200-79712200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:79711400-79712000	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:79711400-79712200	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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