Variant report

Variant	rs62460723
Chromosome Location	chr7:79745990-79745991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1018933	0.88[ASN][1000 genomes]
rs10248649	0.88[ASN][1000 genomes]
rs17153389	0.92[EUR][1000 genomes]
rs17153421	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2013085	0.92[EUR][1000 genomes]
rs62460693	0.82[EUR][1000 genomes]
rs62460694	0.82[EUR][1000 genomes]
rs62460695	0.82[EUR][1000 genomes]
rs62460696	0.92[EUR][1000 genomes]
rs62460697	0.92[EUR][1000 genomes]
rs62460698	0.92[EUR][1000 genomes]
rs62460699	0.92[EUR][1000 genomes]
rs62460701	1.00[EUR][1000 genomes]
rs62460724	0.84[EUR][1000 genomes]
rs62460725	0.84[EUR][1000 genomes]
rs62460726	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79744200-79746800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:79744200-79748600	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:79744200-79755600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:79744400-79752200	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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