Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10155854	0.87[EUR][1000 genomes]
rs1018932	0.86[EUR][1000 genomes]
rs10248649	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10254386	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10273160	0.85[EUR][1000 genomes]
rs10954046	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10954047	0.89[EUR][1000 genomes]
rs12531497	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1962777	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2189340	0.83[EUR][1000 genomes]
rs2366235	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2886607	0.94[LWK][hapmap];0.89[TSI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4728008	0.88[EUR][1000 genomes]
rs62460723	0.88[ASN][1000 genomes]
rs6466947	0.87[EUR][1000 genomes]
rs6945349	0.87[EUR][1000 genomes]
rs6952190	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6952956	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6959063	0.99[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6973993	0.86[EUR][1000 genomes]
rs6974765	0.89[EUR][1000 genomes]
rs6979946	0.83[EUR][1000 genomes]
rs7810958	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79744200-79746800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:79744200-79748600	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:79744200-79755600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:79744400-79752200	Weak transcription	Brain Substantia Nigra	brain

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