Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10155854	0.97[EUR][1000 genomes]
rs1018933	0.86[EUR][1000 genomes]
rs10248649	0.87[EUR][1000 genomes]
rs10254386	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10273160	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10954046	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10954047	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12531497	0.87[EUR][1000 genomes]
rs1962777	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2189340	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2366235	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28696126	0.84[EUR][1000 genomes]
rs2886607	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4728008	0.83[EUR][1000 genomes]
rs6466947	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6945349	0.97[EUR][1000 genomes]
rs6952190	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6952956	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6959063	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6973993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6974765	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6979946	0.97[EUR][1000 genomes]
rs7810958	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79744200-79746800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:79744200-79748600	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:79744200-79755600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:79744400-79752200	Weak transcription	Brain Substantia Nigra	brain

Quick Search: