Variant report

Variant	rs6979946
Chromosome Location	chr7:79755875-79755876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79749208..79750718-chr7:79754504..79757482,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10155854	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1018932	0.97[EUR][1000 genomes]
rs1018933	0.83[EUR][1000 genomes]
rs10248649	0.84[EUR][1000 genomes]
rs10254386	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10273160	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954046	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10954047	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531497	0.84[EUR][1000 genomes]
rs1962777	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2189340	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2366235	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28696126	0.82[EUR][1000 genomes]
rs2886607	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.96[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4728008	0.81[EUR][1000 genomes]
rs6466947	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945349	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952190	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952956	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959063	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6973993	0.93[EUR][1000 genomes]
rs6974765	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810958	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79749000-79756600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:79754200-79756000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:79754200-79756200	Weak transcription	Brain Angular Gyrus	brain
4	chr7:79754400-79758800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:79754400-79762000	Weak transcription	Fetal Thymus	thymus
6	chr7:79754600-79757200	Weak transcription	Dnd41	blood
7	chr7:79754600-79758000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr7:79754600-79758200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr7:79755200-79758600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr7:79755400-79758400	Enhancers	Brain Anterior Caudate	brain
11	chr7:79755400-79758600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:79755600-79757400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
13	chr7:79755600-79758000	Enhancers	Brain Substantia Nigra	brain
14	chr7:79755600-79758200	Enhancers	Brain Hippocampus Middle	brain
15	chr7:79755600-79758600	Enhancers	Brain Cingulate Gyrus	brain
16	chr7:79755800-79756400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr7:79755800-79756600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:79755800-79757400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:79755800-79758000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:79755800-79758200	Enhancers	Brain Inferior Temporal Lobe	brain

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