Variant report
| Variant | rs6945349 |
|---|---|
| Chromosome Location | chr7:79723943-79723944 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10155854 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1018932 | 0.97[EUR][1000 genomes] |
| rs1018933 | 0.87[EUR][1000 genomes] |
| rs10248649 | 0.88[EUR][1000 genomes] |
| rs10254386 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10273160 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10954046 | 0.99[EUR][1000 genomes] |
| rs10954047 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12531497 | 0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1962777 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2189340 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2366235 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28696126 | 0.87[EUR][1000 genomes] |
| rs2886607 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4728008 | 0.86[EUR][1000 genomes] |
| rs6466947 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6952190 | 0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6952956 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6959063 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6973993 | 0.97[EUR][1000 genomes] |
| rs6974765 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6979946 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7810958 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv607678 | chr7:79665817-79726578 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1027494 | chr7:79693976-79760332 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79721400-79735000 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
