Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10155854	1.00[EUR][1000 genomes]
rs1018932	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1018933	0.87[EUR][1000 genomes]
rs10248649	0.88[EUR][1000 genomes]
rs10254386	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10273160	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10954046	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10954047	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12531497	0.90[EUR][1000 genomes]
rs1962777	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2189340	0.94[EUR][1000 genomes]
rs2366235	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28696126	0.87[EUR][1000 genomes]
rs2886607	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4728008	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466947	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6945349	1.00[EUR][1000 genomes]
rs6952190	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6952956	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6959063	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6973993	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6974765	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6979946	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79721400-79735000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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