Variant report

Variant	rs62460726
Chromosome Location	chr7:79756370-79756371
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79749208..79750718-chr7:79754504..79757482,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17153421	0.84[EUR][1000 genomes]
rs62460701	0.84[EUR][1000 genomes]
rs62460723	0.84[EUR][1000 genomes]
rs62460724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62460725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79749000-79756600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:79754400-79758800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:79754400-79762000	Weak transcription	Fetal Thymus	thymus
4	chr7:79754600-79757200	Weak transcription	Dnd41	blood
5	chr7:79754600-79758000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:79754600-79758200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:79755200-79758600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:79755400-79758400	Enhancers	Brain Anterior Caudate	brain
9	chr7:79755400-79758600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:79755600-79757400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr7:79755600-79758000	Enhancers	Brain Substantia Nigra	brain
12	chr7:79755600-79758200	Enhancers	Brain Hippocampus Middle	brain
13	chr7:79755600-79758600	Enhancers	Brain Cingulate Gyrus	brain
14	chr7:79755800-79756400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr7:79755800-79756600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:79755800-79757400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:79755800-79758000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:79755800-79758200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr7:79756000-79756400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
20	chr7:79756000-79757600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:79756000-79758000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr7:79756000-79758400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
23	chr7:79756000-79758800	Enhancers	Primary hematopoietic stem cells	blood
24	chr7:79756200-79756400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
25	chr7:79756200-79756400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
26	chr7:79756200-79756600	Enhancers	Brain Germinal Matrix	brain
27	chr7:79756200-79758000	Enhancers	Brain Angular Gyrus	brain
28	chr7:79756200-79758200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
29	chr7:79756200-79758600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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