Variant report

Variant	rs62460694
Chromosome Location	chr7:79708649-79708650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10272435	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10278055	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1034721	0.91[ASN][1000 genomes]
rs10486917	0.91[ASN][1000 genomes]
rs10486920	0.81[ASN][1000 genomes]
rs12668303	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12669805	0.89[ASN][1000 genomes]
rs12673179	0.81[ASN][1000 genomes]
rs12673496	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12673899	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17153215	0.81[AMR][1000 genomes]
rs17153306	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17153363	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17153389	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17153392	0.94[ASN][1000 genomes]
rs17153421	0.82[EUR][1000 genomes]
rs2013085	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28607619	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs41488346	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57112658	0.91[AMR][1000 genomes]
rs58310336	0.91[ASN][1000 genomes]
rs60238764	0.94[ASN][1000 genomes]
rs61364846	0.91[ASN][1000 genomes]
rs62460662	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62460688	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62460690	0.82[EUR][1000 genomes]
rs62460691	0.82[EUR][1000 genomes]
rs62460692	0.84[EUR][1000 genomes]
rs62460693	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62460695	1.00[EUR][1000 genomes]
rs62460696	0.92[EUR][1000 genomes]
rs62460697	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62460698	0.92[EUR][1000 genomes]
rs62460699	0.92[EUR][1000 genomes]
rs62460701	0.82[EUR][1000 genomes]
rs62460723	0.82[EUR][1000 genomes]
rs62461710	0.91[AMR][1000 genomes]
rs62461731	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62461732	0.82[EUR][1000 genomes]
rs62461734	0.82[EUR][1000 genomes]
rs6964183	0.89[ASN][1000 genomes]
rs7798365	0.94[ASN][1000 genomes]
rs7808200	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79707400-79709600	Enhancers	Fetal Brain Male	brain
2	chr7:79707600-79716600	Weak transcription	Brain Substantia Nigra	brain
3	chr7:79708000-79711600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:79708000-79716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:79708200-79711400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:79708400-79710400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr7:79708400-79711200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:79708400-79711400	Weak transcription	HUVEC	blood vessel
9	chr7:79708400-79716400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:79708400-79716800	Weak transcription	NHEK	skin

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