Variant report

Variant	rs62460662
Chromosome Location	chr7:79691988-79691989
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10272435	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10278055	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1034721	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10486917	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10486920	0.86[ASN][1000 genomes]
rs12668303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12669805	0.95[ASN][1000 genomes]
rs12673179	0.86[ASN][1000 genomes]
rs12673496	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12673899	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17153215	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17153306	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17153363	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17153389	0.85[ASN][1000 genomes]
rs17153392	0.88[ASN][1000 genomes]
rs2013085	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28607619	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41488346	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4604374	0.92[EUR][1000 genomes]
rs57112658	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58310336	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60238764	1.00[ASN][1000 genomes]
rs61364846	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62460661	0.92[EUR][1000 genomes]
rs62460688	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62460690	1.00[EUR][1000 genomes]
rs62460691	1.00[EUR][1000 genomes]
rs62460693	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62460694	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62460695	0.82[EUR][1000 genomes]
rs62460697	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs62461710	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62461731	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62461732	1.00[EUR][1000 genomes]
rs62461734	1.00[EUR][1000 genomes]
rs6964183	0.95[ASN][1000 genomes]
rs7798365	1.00[ASN][1000 genomes]
rs7808200	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79690200-79696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:79691200-79692400	Weak transcription	Fetal Lung	lung

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