Variant report

Variant	rs17807354
Chromosome Location	chr12:9963485-9963486
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10128846	0.83[CHB][hapmap]
rs11053174	0.83[CHB][hapmap]
rs12582047	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16907191	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17459247	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56053011	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56400313	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57144794	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57451228	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57483180	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58848817	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58882780	0.85[ASN][1000 genomes]
rs59639038	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60605691	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61361909	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7137693	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74062765	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7964276	0.83[CHB][hapmap]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9962600-9964600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:9962800-9963800	Enhancers	Dnd41	blood
3	chr12:9962800-9964000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr12:9962800-9965000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:9963000-9963800	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:9963000-9963800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:9963000-9964000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:9963200-9963800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr12:9963200-9964200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:9963200-9964600	Enhancers	Primary B cells from cord blood	blood
11	chr12:9963200-9964600	Enhancers	Primary B cells from peripheral blood	blood
12	chr12:9963200-9964600	Enhancers	Primary T cells from cord blood	blood
13	chr12:9963400-9963600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr12:9963400-9963600	Enhancers	Thymus	Thymus
15	chr12:9963400-9963800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr12:9963400-9963800	Enhancers	Fetal Thymus	thymus
17	chr12:9963400-9963800	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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