Variant report

Variant	rs59639038
Chromosome Location	chr12:9967051-9967052
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9901588..9903730-chr12:9963848..9968130,4	K562	blood:
2	chr12:9966552..9967437-chr12:10060979..10062470,4	K562	blood:
3	chr12:9966403..9967529-chr12:10077074..10079200,18	MCF-7	breast:
4	chr12:9966658..9967409-chr12:10077781..10079121,6	MCF-7	breast:
5	chr12:9966509..9967473-chr12:10078086..10079366,6	K562	blood:
6	chr12:9966874..9967473-chr12:10162556..10163093,2	MCF-7	breast:
7	chr12:9965884..9968013-chr12:10078190..10080752,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17807354	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56053011	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56400313	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57144794	0.89[EUR][1000 genomes]
rs57451228	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57483180	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58848817	0.91[EUR][1000 genomes]
rs58882780	0.81[AFR][1000 genomes]
rs60605691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61361909	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7137693	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs74062765	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9966200-9967200	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr12:9966200-9967200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:9966400-9967200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:9966400-9967200	Enhancers	Spleen	Spleen
5	chr12:9966400-9967200	Flanking Active TSS	Dnd41	blood
6	chr12:9966600-9967200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr12:9966600-9967200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
8	chr12:9966600-9967200	Enhancers	Lung	lung
9	chr12:9966600-9968800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:9966800-9967200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr12:9967000-9967200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr12:9967000-9967200	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr12:9967000-9967200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr12:9967000-9967200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr12:9967000-9967200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr12:9967000-9967200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr12:9967000-9967200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr12:9967000-9967200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
19	chr12:9967000-9967200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr12:9967000-9967200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr12:9967000-9967200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr12:9967000-9967200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:9967000-9967200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr12:9967000-9967200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr12:9967000-9967200	Enhancers	Adipose Nuclei	Adipose
26	chr12:9967000-9967200	Enhancers	Liver	Liver
27	chr12:9967000-9967200	Enhancers	Esophagus	oesophagus
28	chr12:9967000-9967200	Enhancers	Placenta	Placenta
29	chr12:9967000-9967200	Enhancers	Fetal Thymus	thymus
30	chr12:9967000-9967200	Enhancers	Right Atrium	heart
31	chr12:9967000-9967200	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr12:9967000-9967400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr12:9967000-9967400	Enhancers	Primary T cells fromperipheralblood	blood

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