Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1034003	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10493614	0.83[ASN][1000 genomes]
rs11162545	0.83[ASN][1000 genomes]
rs12563160	0.83[ASN][1000 genomes]
rs12731730	0.82[ASN][1000 genomes]
rs12734271	0.81[ASN][1000 genomes]
rs1571158	0.83[ASN][1000 genomes]
rs1571159	0.83[ASN][1000 genomes]
rs1571160	0.83[ASN][1000 genomes]
rs1751515	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1751516	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1751519	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1751520	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1751521	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1780716	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1780717	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1780720	0.83[ASN][1000 genomes]
rs1780725	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1926890	0.81[ASN][1000 genomes]
rs1926893	0.83[ASN][1000 genomes]
rs2767487	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4650377	0.83[ASN][1000 genomes]
rs4650601	0.81[ASN][1000 genomes]
rs6661796	0.83[ASN][1000 genomes]
rs7415230	0.83[ASN][1000 genomes]
rs7529611	0.83[ASN][1000 genomes]
rs7531774	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv491784	chr1:79146141-79853482	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv871588	chr1:79164901-79214489	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79178400-79184800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:79178400-79185000	Enhancers	Osteobl	bone
3	chr1:79180000-79184600	Enhancers	NHDF-Ad	bronchial
4	chr1:79180600-79184800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:79182800-79184800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr1:79182800-79187800	Weak transcription	HSMMtube	muscle
7	chr1:79183000-79184400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:79183400-79184800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:79183600-79184600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:79184000-79184800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:79184000-79184800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:79184200-79184400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:79184200-79184800	Enhancers	HSMM	muscle

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