Variant report

Variant	rs17810318
Chromosome Location	chr6:73904612-73904613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:73899586-73904758..6:74078047-74099067	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000203907	Chromatin interaction
ENSG00000231332	Chromatin interaction
ENSG00000235174	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12214308	1.00[AFR][1000 genomes]
rs12214703	1.00[AFR][1000 genomes]
rs55756640	1.00[AFR][1000 genomes]
rs55899720	1.00[AFR][1000 genomes]
rs62440579	1.00[AFR][1000 genomes]
rs62440583	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv823732	chr6:73904108-73904995	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73891000-73909600	Weak transcription	HSMMtube	muscle
2	chr6:73892000-73904800	Weak transcription	GM12878-XiMat	blood
3	chr6:73901000-73910200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:73902200-73906200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:73902200-73910200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:73902800-73916600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:73903000-73906800	Weak transcription	Brain Angular Gyrus	brain
8	chr6:73903000-73910400	Weak transcription	HSMM	muscle
9	chr6:73903000-73912200	Weak transcription	Thymus	Thymus
10	chr6:73903400-73907000	Weak transcription	Fetal Brain Female	brain
11	chr6:73903400-73907800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:73903600-73906000	Strong transcription	Primary T cells from cord blood	blood
13	chr6:73903600-73907000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr6:73903600-73907600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:73903800-73905200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:73903800-73906400	Strong transcription	Primary B cells from cord blood	blood
17	chr6:73903800-73910600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:73904000-73907800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:73904200-73904800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:73904200-73905000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:73904200-73905000	Strong transcription	Dnd41	blood
22	chr6:73904200-73905200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:73904200-73905400	Strong transcription	Primary hematopoietic stem cells	blood
24	chr6:73904200-73906200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:73904200-73906600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:73904400-73904800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr6:73904400-73905000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:73904400-73905200	Strong transcription	Aorta	Aorta
29	chr6:73904400-73905400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:73904400-73905400	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:73904600-73906600	Weak transcription	Gastric	stomach

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