Variant report

Variant	rs17815661
Chromosome Location	chr21:39794794-39794795
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39789447..39791196-chr21:39794659..39797450,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11909765	1.00[CHD][hapmap]
rs17230512	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17230519	1.00[GIH][hapmap]
rs2836380	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs28811397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs466310	1.00[JPT][hapmap]
rs725233	0.93[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7283796	1.00[CHD][hapmap]
rs8133155	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9977445	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9983067	0.88[EUR][1000 genomes]
rs9983703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9984089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058886	chr21:39341560-39799638	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv834098	chr21:39691898-39845254	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39770600-39796200	Weak transcription	Gastric	stomach
2	chr21:39772600-39803000	Weak transcription	Adipose Nuclei	Adipose
3	chr21:39777000-39795200	Weak transcription	Lung	lung
4	chr21:39780400-39798800	Weak transcription	Ovary	ovary
5	chr21:39780800-39796200	Weak transcription	Right Ventricle	heart
6	chr21:39781000-39807400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr21:39784800-39798400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr21:39784800-39798400	Strong transcription	HUVEC	blood vessel
9	chr21:39784800-39807400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr21:39785200-39808400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr21:39786600-39803600	Strong transcription	Primary hematopoietic stem cells	blood
12	chr21:39788000-39807000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr21:39789400-39797200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr21:39789800-39800000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr21:39790400-39802400	Weak transcription	Left Ventricle	heart
16	chr21:39792000-39794800	Strong transcription	Spleen	Spleen
17	chr21:39792600-39795600	Strong transcription	Aorta	Aorta
18	chr21:39793400-39795800	Weak transcription	Thymus	Thymus
19	chr21:39793600-39795400	Weak transcription	Fetal Thymus	thymus
20	chr21:39793600-39796000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr21:39794000-39795400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr21:39794400-39796200	Weak transcription	Fetal Stomach	stomach

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