Variant report

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17230512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17815661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2836380	0.87[AFR][1000 genomes]
rs725233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8133155	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9977445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9983067	0.88[EUR][1000 genomes]
rs9983703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9984089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834098	chr21:39691898-39845254	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv3328915	chr21:39801313-39801602	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39772600-39803000	Weak transcription	Adipose Nuclei	Adipose
2	chr21:39781000-39807400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:39784800-39807400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr21:39785200-39808400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr21:39786600-39803600	Strong transcription	Primary hematopoietic stem cells	blood
6	chr21:39788000-39807000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr21:39790400-39802400	Weak transcription	Left Ventricle	heart
8	chr21:39794800-39806200	Weak transcription	Spleen	Spleen
9	chr21:39795400-39813000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr21:39796600-39815600	Weak transcription	Gastric	stomach
11	chr21:39796800-39802600	Weak transcription	Fetal Stomach	stomach
12	chr21:39796800-39806200	Weak transcription	Lung	lung
13	chr21:39796800-39807400	Weak transcription	Aorta	Aorta
14	chr21:39797000-39810800	Weak transcription	Fetal Thymus	thymus
15	chr21:39800400-39804000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr21:39800600-39802000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr21:39800600-39804600	Weak transcription	Fetal Heart	heart
18	chr21:39801000-39801600	Weak transcription	Fetal Lung	lung
19	chr21:39801200-39803200	Weak transcription	HUVEC	blood vessel
20	chr21:39801200-39811400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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