Variant report

Variant	rs17817489
Chromosome Location	chr9:117750309-117750310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10117421	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12336431	1.00[ASN][1000 genomes]
rs12342978	1.00[ASN][1000 genomes]
rs1330361	1.00[CHB][hapmap]
rs1537011	1.00[CHB][hapmap]
rs17239323	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17241078	1.00[CHB][hapmap]
rs17241442	1.00[CHB][hapmap]
rs17241477	1.00[CHB][hapmap]
rs17819299	1.00[CHB][hapmap]
rs17819466	1.00[CHB][hapmap]
rs2150101	1.00[CHB][hapmap]
rs4549855	1.00[CHB][hapmap]
rs56961588	1.00[ASN][1000 genomes]
rs57398199	1.00[ASN][1000 genomes]
rs62578723	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117747800-117752400	Enhancers	Hela-S3	cervix
2	chr9:117748800-117751600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:117749600-117757800	Weak transcription	Spleen	Spleen
4	chr9:117750200-117751200	Weak transcription	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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