Variant report

Variant	rs62578723
Chromosome Location	chr9:117751650-117751651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16932058	0.83[ASN][1000 genomes]
rs17239323	0.90[EUR][1000 genomes]
rs17817489	0.89[EUR][1000 genomes]
rs60687796	0.83[ASN][1000 genomes]
rs73656713	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117747800-117752400	Enhancers	Hela-S3	cervix
2	chr9:117749600-117757800	Weak transcription	Spleen	Spleen
3	chr9:117750400-117753000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:117750600-117753000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:117750800-117752200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr9:117750800-117753600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr9:117751000-117751800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:117751000-117751800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr9:117751000-117751800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:117751000-117752000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:117751000-117753000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr9:117751000-117753000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr9:117751000-117753200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr9:117751000-117753800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:117751000-117754000	Enhancers	Primary T cells from cord blood	blood
16	chr9:117751200-117752000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:117751200-117752000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr9:117751200-117752000	Enhancers	Fetal Intestine Large	intestine
19	chr9:117751200-117752400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr9:117751200-117752800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr9:117751200-117752800	Enhancers	Fetal Thymus	thymus
22	chr9:117751200-117753200	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr9:117751400-117751800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:117751400-117752000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr9:117751400-117752400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:117751400-117753200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr9:117751600-117752000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr9:117751600-117752200	Enhancers	Placenta Amnion	Placenta Amnion
29	chr9:117751600-117752600	Enhancers	Primary B cells from peripheral blood	blood
30	chr9:117751600-117752600	Flanking Active TSS	Dnd41	blood
31	chr9:117751600-117752600	Enhancers	GM12878-XiMat	blood

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