Variant report

Variant	rs60687796
Chromosome Location	chr9:117763036-117763037
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12683163	1.00[EUR][1000 genomes]
rs16932058	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932066	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932085	1.00[EUR][1000 genomes]
rs2274753	1.00[EUR][1000 genomes]
rs2274754	1.00[EUR][1000 genomes]
rs34166409	1.00[EUR][1000 genomes]
rs3748172	1.00[EUR][1000 genomes]
rs57060600	1.00[EUR][1000 genomes]
rs60347203	1.00[EUR][1000 genomes]
rs62578723	0.83[ASN][1000 genomes]
rs73656713	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117762200-117766600	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr9:117762400-117763200	Enhancers	Fetal Stomach	stomach
3	chr9:117762600-117763200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
4	chr9:117762800-117765000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:117762800-117768200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:117763000-117765000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:117763000-117768200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:117763000-117768600	Weak transcription	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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