Variant report

Variant	rs16932058
Chromosome Location	chr9:117772328-117772329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117767848..117769441-chr9:117770775..117772863,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12683163	1.00[EUR][1000 genomes]
rs16932066	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932085	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2274753	1.00[EUR][1000 genomes]
rs2274754	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34166409	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3748172	1.00[EUR][1000 genomes]
rs3789876	0.84[AMR][1000 genomes]
rs57060600	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60347203	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60687796	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62578723	0.83[ASN][1000 genomes]
rs73656713	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117767800-117773000	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr9:117768400-117776000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:117768600-117774400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:117769800-117775800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr9:117770000-117772600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:117771000-117774200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:117771200-117783000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:117771400-117773000	Weak transcription	NHLF	lung
9	chr9:117771400-117773200	Weak transcription	Fetal Lung	lung
10	chr9:117771400-117776200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:117771400-117778600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:117771400-117784600	Weak transcription	HMEC	breast
13	chr9:117771600-117772800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:117771600-117773000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr9:117771600-117773000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:117771600-117774600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:117771600-117776000	Weak transcription	Hela-S3	cervix
18	chr9:117771800-117773800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:117771800-117779000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr9:117772200-117773200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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