Variant report

Variant	rs16932066
Chromosome Location	chr9:117776823-117776824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:117443499..117444975-chr9:117775722..117777924,20	MCF-7	breast:
2	chr9:117672786..117673783-chr9:117775999..117776990,4	MCF-7	breast:
3	chr9:117776404..117777930-chr9:118286444..118287425,4	MCF-7	breast:
4	chr9:117502244..117504474-chr9:117775999..117777643,2	MCF-7	breast:
5	chr9:117500446..117501896-chr9:117775969..117778215,11	MCF-7	breast:
6	chr9:117776370..117777112-chr9:117788189..117788790,2	MCF-7	breast:
7	chr9:117713895..117715040-chr9:117775983..117776889,3	MCF-7	breast:
8	chr9:117442900..117446108-chr9:117775232..117777695,3	MCF-7	breast:
9	chr9:117676223..117677155-chr9:117776236..117776995,3	MCF-7	breast:
10	chr9:117501137..117501750-chr9:117776085..117776968,2	MCF-7	breast:
11	chr9:117676108..117677078-chr9:117776037..117776911,10	MCF-7	breast:
12	chr9:117443095..117445141-chr9:117775959..117778088,21	MCF-7	breast:
13	chr9:117424062..117425088-chr9:117776088..117778377,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000230054	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12683163	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932058	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16932085	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2274753	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2274754	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34166409	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3748172	1.00[EUR][1000 genomes]
rs3789876	1.00[GIH][hapmap];0.91[MEX][hapmap];0.97[AMR][1000 genomes]
rs57060600	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60347203	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60687796	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73656713	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117771200-117783000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:117771400-117778600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:117771400-117784600	Weak transcription	HMEC	breast
4	chr9:117771800-117779000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr9:117773400-117803200	Weak transcription	Esophagus	oesophagus
6	chr9:117773600-117787200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:117774400-117780400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:117774800-117783200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:117775000-117782200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:117775200-117777000	Enhancers	Dnd41	blood
11	chr9:117775600-117780400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:117776200-117777400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:117776400-117777600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:117776400-117778000	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr9:117776400-117778600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr9:117776400-117784400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:117776400-117786000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:117776600-117777000	Enhancers	Colon Smooth Muscle	Colon
19	chr9:117776600-117777400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:117776600-117777400	Enhancers	Osteobl	bone
21	chr9:117776800-117777000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:117776800-117777000	Enhancers	Fetal Muscle Leg	muscle
23	chr9:117776800-117777200	Enhancers	NHDF-Ad	bronchial
24	chr9:117776800-117777600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:117776800-117777800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:117776800-117778200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr9:117776800-117778600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:117776800-117791600	Weak transcription	Fetal Lung	lung

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