Variant report

Variant	rs17818230
Chromosome Location	chr15:35408078-35408079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10519978	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440463	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13380141	0.94[ASN][1000 genomes]
rs1380091	0.94[ASN][1000 genomes]
rs1809254	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2068286	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4924543	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4924550	0.94[ASN][1000 genomes]
rs6495757	0.94[ASN][1000 genomes]
rs7163827	0.94[ASN][1000 genomes]
rs7168206	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8043460	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9302308	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv569155	chr15:35371869-35408386	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
4	nsv1052721	chr15:35381487-35437841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
5	esv2761867	chr15:35395441-35409539	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35401200-35415000	Weak transcription	Adipose Nuclei	Adipose
2	chr15:35407000-35412600	Enhancers	Liver	Liver
3	chr15:35407400-35408400	Enhancers	Fetal Lung	lung
4	chr15:35407600-35408600	Enhancers	Brain Germinal Matrix	brain
5	chr15:35407600-35415600	Weak transcription	Pancreas	Pancrea
6	chr15:35407800-35408200	Enhancers	NHEK	skin
7	chr15:35407800-35411600	Weak transcription	HepG2	liver
8	chr15:35407800-35412600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:35408000-35409000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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