Variant report

Variant	rs2068286
Chromosome Location	chr15:35410545-35410546
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10519978	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12440463	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13380141	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1380091	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17818230	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1809254	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4924543	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4924550	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6495757	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7163827	0.89[ASN][1000 genomes]
rs7168206	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8043460	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302308	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1052721	chr15:35381487-35437841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35401200-35415000	Weak transcription	Adipose Nuclei	Adipose
2	chr15:35407000-35412600	Enhancers	Liver	Liver
3	chr15:35407600-35415600	Weak transcription	Pancreas	Pancrea
4	chr15:35407800-35411600	Weak transcription	HepG2	liver
5	chr15:35407800-35412600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:35408800-35412600	Enhancers	Fetal Lung	lung
7	chr15:35409000-35410600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr15:35409200-35410600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr15:35409800-35410600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:35409800-35410600	Enhancers	NHDF-Ad	bronchial
11	chr15:35410000-35413800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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