Variant report

Variant	rs17821218
Chromosome Location	chr2:46901449-46901450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:46893617..46895324-chr2:46899747..46902605,2	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10495937	0.83[EUR][1000 genomes]
rs12104869	1.00[YRI][hapmap]
rs1446496	0.82[EUR][1000 genomes]
rs1446497	0.82[EUR][1000 genomes]
rs1446498	0.82[EUR][1000 genomes]
rs1563406	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17035429	0.87[EUR][1000 genomes]
rs17035437	0.87[EUR][1000 genomes]
rs17035438	0.87[EUR][1000 genomes]
rs17035540	1.00[YRI][hapmap]
rs17767067	0.87[CEU][hapmap]
rs17767121	0.87[CEU][hapmap]
rs17767151	0.87[CEU][hapmap]
rs17767283	0.87[CEU][hapmap]
rs17767307	0.87[CEU][hapmap]
rs17769041	0.88[EUR][1000 genomes]
rs17769580	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17769689	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17769921	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17771005	0.87[CEU][hapmap]
rs17771017	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17771942	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17772285	0.82[EUR][1000 genomes]
rs17820969	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17821989	0.82[EUR][1000 genomes]
rs17822782	0.82[EUR][1000 genomes]
rs2045290	0.82[EUR][1000 genomes]
rs2124472	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3927078	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41379148	0.82[EUR][1000 genomes]
rs55775748	0.88[EUR][1000 genomes]
rs56199036	0.82[EUR][1000 genomes]
rs56800355	0.82[EUR][1000 genomes]
rs58903656	0.82[EUR][1000 genomes]
rs6732079	0.87[EUR][1000 genomes]
rs6735101	1.00[CEU][hapmap]
rs72800570	0.87[EUR][1000 genomes]
rs72800576	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72800577	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72800587	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72800597	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72800599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72800600	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72800602	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72802404	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72802406	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72802407	0.97[EUR][1000 genomes]
rs72802408	0.93[EUR][1000 genomes]
rs72802411	0.89[EUR][1000 genomes]
rs72802412	0.83[EUR][1000 genomes]
rs72802415	0.85[EUR][1000 genomes]
rs72802420	0.82[EUR][1000 genomes]
rs72802426	0.82[EUR][1000 genomes]
rs72802444	0.82[EUR][1000 genomes]
rs72802448	0.82[EUR][1000 genomes]
rs72802451	0.82[EUR][1000 genomes]
rs72802454	0.82[EUR][1000 genomes]
rs72802455	0.82[EUR][1000 genomes]
rs72802456	0.82[EUR][1000 genomes]
rs72802458	0.80[EUR][1000 genomes]
rs72802466	0.82[EUR][1000 genomes]
rs72802467	0.82[EUR][1000 genomes]
rs72802486	0.82[EUR][1000 genomes]
rs72802487	0.82[EUR][1000 genomes]
rs72802492	0.80[EUR][1000 genomes]
rs7566275	1.00[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014425	chr2:46670179-47033417	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv535678	chr2:46670179-47033417	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv873996	chr2:46670941-47065227	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1009735	chr2:46724523-46913152	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv533112	chr2:46800828-46959977	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
7	nsv873997	chr2:46821640-46984627	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:46898200-46905800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:46898800-46902400	Weak transcription	Fetal Stomach	stomach
3	chr2:46900800-46902600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:46900800-46902800	Enhancers	NHDF-Ad	bronchial
5	chr2:46901000-46902400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:46901000-46902600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:46901000-46902600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:46901200-46901600	Enhancers	NHLF	lung
9	chr2:46901200-46902200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:46901200-46902400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:46901400-46902400	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links