Variant report

Variant	rs17822052
Chromosome Location	chr16:48222269-48222270
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17743708	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17821664	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs41280941	0.98[EUR][1000 genomes]
rs55978876	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61739606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62058520	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62058523	0.98[EUR][1000 genomes]
rs62058524	0.98[EUR][1000 genomes]
rs62058525	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62058527	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62058529	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62058530	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62058531	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8050306	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48199200-48226600	Weak transcription	Spleen	Spleen
2	chr16:48216400-48226400	Weak transcription	Esophagus	oesophagus
3	chr16:48218800-48228000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:48220800-48224000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr16:48221600-48224000	Enhancers	HepG2	liver
6	chr16:48221800-48223200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr16:48222000-48222600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr16:48222000-48223400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr16:48222200-48222600	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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