Variant report

Variant	rs55978876
Chromosome Location	chr16:48200841-48200842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17743708	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17821664	1.00[EUR][1000 genomes]
rs17822052	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs41280941	1.00[EUR][1000 genomes]
rs61739606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62058520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62058523	1.00[EUR][1000 genomes]
rs62058524	1.00[EUR][1000 genomes]
rs62058525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62058527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62058529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62058530	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62058531	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8050306	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48192800-48204000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:48198800-48204800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr16:48199000-48201200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr16:48199200-48226600	Weak transcription	Spleen	Spleen
5	chr16:48199600-48202000	Weak transcription	Adipose Nuclei	Adipose
6	chr16:48200200-48201200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr16:48200200-48209000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr16:48200400-48201400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr16:48200400-48201600	Enhancers	HepG2	liver
10	chr16:48200600-48201200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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