Variant report

Variant	rs17823587
Chromosome Location	chr4:90125034-90125035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10000140	1.00[ASN][1000 genomes]
rs10027874	1.00[ASN][1000 genomes]
rs10030342	1.00[ASN][1000 genomes]
rs11734085	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506327	1.00[ASN][1000 genomes]
rs12507819	1.00[ASN][1000 genomes]
rs13113298	1.00[ASN][1000 genomes]
rs13115669	1.00[ASN][1000 genomes]
rs13120109	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13137443	1.00[ASN][1000 genomes]
rs13150503	1.00[ASN][1000 genomes]
rs1513817	1.00[ASN][1000 genomes]
rs1588730	1.00[ASN][1000 genomes]
rs17770341	1.00[ASN][1000 genomes]
rs17821540	1.00[ASN][1000 genomes]
rs2056012	1.00[ASN][1000 genomes]
rs2195755	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33998578	1.00[ASN][1000 genomes]
rs34008667	1.00[ASN][1000 genomes]
rs34075854	1.00[ASN][1000 genomes]
rs34300408	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34624010	1.00[ASN][1000 genomes]
rs35652620	1.00[ASN][1000 genomes]
rs35909707	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36111123	1.00[ASN][1000 genomes]
rs5004788	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62306389	1.00[ASN][1000 genomes]
rs62308627	1.00[ASN][1000 genomes]
rs6814023	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6823660	1.00[ASN][1000 genomes]
rs6856010	1.00[ASN][1000 genomes]
rs7668782	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv830002	chr4:90056232-90258865	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv594809	chr4:90123667-90132470	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90117800-90127800	Weak transcription	Pancreas	Pancrea
2	chr4:90122000-90125200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:90125000-90127200	Enhancers	Hela-S3	cervix

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