Variant report

Variant	rs13115669
Chromosome Location	chr4:89962929-89962930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:89958290..89961976-chr4:89962319..89966068,4	K562	blood:
2	chr4:89962640..89965457-chr4:89973321..89975706,2	K562	blood:
3	chr4:89958647..89961976-chr4:89962746..89966068,3	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10000140	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10024807	0.83[AMR][1000 genomes]
rs10027874	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029662	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10030342	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097210	0.82[AMR][1000 genomes]
rs11097211	0.82[AMR][1000 genomes]
rs11734085	1.00[ASN][1000 genomes]
rs12506327	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12507819	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113298	1.00[ASN][1000 genomes]
rs13120109	1.00[ASN][1000 genomes]
rs13137443	1.00[ASN][1000 genomes]
rs13138946	0.83[EUR][1000 genomes]
rs13150503	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513817	1.00[ASN][1000 genomes]
rs1588730	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014988	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17770341	1.00[ASN][1000 genomes]
rs17821540	1.00[ASN][1000 genomes]
rs17823587	1.00[ASN][1000 genomes]
rs2056012	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195755	1.00[ASN][1000 genomes]
rs33998578	1.00[ASN][1000 genomes]
rs34008667	1.00[ASN][1000 genomes]
rs34075854	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34300408	1.00[ASN][1000 genomes]
rs34624010	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35130975	0.85[EUR][1000 genomes]
rs35652620	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35909707	1.00[ASN][1000 genomes]
rs36111123	1.00[ASN][1000 genomes]
rs5004788	1.00[ASN][1000 genomes]
rs59385067	0.83[AMR][1000 genomes]
rs61286299	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62306389	1.00[ASN][1000 genomes]
rs62308627	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532102	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6814023	1.00[ASN][1000 genomes]
rs6823660	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6826407	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6827398	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6853075	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6856010	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857969	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7660377	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7668782	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674344	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs874147	0.83[AMR][1000 genomes]
rs9996559	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv461577	chr4:89904124-89986326	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv594807	chr4:89904124-89986326	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89937200-89975600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:89944200-89978000	Weak transcription	Pancreas	Pancrea
3	chr4:89945600-89963000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:89946200-89972800	Weak transcription	A549	lung
5	chr4:89958000-89972200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:89958200-89974400	Weak transcription	Aorta	Aorta
7	chr4:89958400-89965600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:89958400-89970200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:89958400-89971400	Weak transcription	Ovary	ovary
10	chr4:89959000-89972200	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:89959000-89972400	Weak transcription	Fetal Intestine Small	intestine
12	chr4:89959000-89972600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr4:89959000-89975400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:89959200-89964600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:89959200-89965000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:89959200-89965400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:89959200-89974400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:89959400-89964000	Weak transcription	Fetal Stomach	stomach
19	chr4:89959400-89972200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr4:89962000-89971200	Weak transcription	K562	blood

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