Variant report

Variant	rs35130975
Chromosome Location	chr4:90017544-90017545
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10000140	0.86[EUR][1000 genomes]
rs10027874	0.89[EUR][1000 genomes]
rs10030342	0.93[EUR][1000 genomes]
rs12506327	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12507819	0.86[EUR][1000 genomes]
rs13113298	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13115669	0.85[EUR][1000 genomes]
rs13137443	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13138946	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13150503	0.93[EUR][1000 genomes]
rs1588730	0.89[EUR][1000 genomes]
rs2056012	0.95[EUR][1000 genomes]
rs33998578	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34008667	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34075854	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34624010	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35652620	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36111123	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62304457	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62306389	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62308627	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6823660	0.85[EUR][1000 genomes]
rs6856010	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7668782	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1007025	chr4:89837734-90098046	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv537176	chr4:89837734-90098046	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1002448	chr4:89933385-90128133	Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3438110	chr4:90016954-90019802	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3395246	chr4:90017079-90019427	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3398416	chr4:90017529-90019127	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90017200-90031600	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links