Variant report

Variant	rs17826053
Chromosome Location	chr3:159717629-159717630
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2243131	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2561284	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs475825	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs568408	0.93[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640039	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs662959	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159707200-159719400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:159707200-159719600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:159707200-159724200	Weak transcription	Psoas Muscle	Psoas
4	chr3:159707400-159719800	Weak transcription	Primary B cells from cord blood	blood
5	chr3:159707400-159719800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:159707600-159719800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:159708000-159719200	Weak transcription	Brain Hippocampus Middle	brain
8	chr3:159708200-159719000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:159708200-159719400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:159709800-159723800	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:159711600-159724200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:159712000-159729600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:159712200-159718200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:159712200-159718200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:159712200-159721400	Weak transcription	GM12878-XiMat	blood
16	chr3:159712400-159718200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:159712800-159719000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr3:159712800-159719000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:159713000-159718800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:159713000-159734800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:159713400-159719600	Weak transcription	Brain Substantia Nigra	brain
22	chr3:159713400-159721400	Weak transcription	NHLF	lung
23	chr3:159714400-159719000	Weak transcription	HSMM	muscle
24	chr3:159714400-159719000	Weak transcription	HSMMtube	muscle
25	chr3:159714400-159719200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:159714400-159719400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:159714400-159721000	Weak transcription	Osteobl	bone
28	chr3:159714400-159721200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:159714600-159719000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr3:159714600-159719600	Weak transcription	NHDF-Ad	bronchial
31	chr3:159714800-159722800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:159715000-159722800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:159716600-159719400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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