Variant report

Variant	rs475825
Chromosome Location	chr3:159710328-159710329
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159709674..159711926-chr3:159713245..159715321,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17826053	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2243131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2561284	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs568408	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs640039	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs662959	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829769	chr3:159606913-159805282	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159707000-159711400	Weak transcription	Fetal Brain Male	brain
2	chr3:159707200-159710600	Weak transcription	HUVEC	blood vessel
3	chr3:159707200-159711400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:159707200-159719400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:159707200-159719600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:159707200-159724200	Weak transcription	Psoas Muscle	Psoas
7	chr3:159707400-159710600	Weak transcription	A549	lung
8	chr3:159707400-159710800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:159707400-159711600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:159707400-159711800	Weak transcription	NH-A	brain
11	chr3:159707400-159713200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:159707400-159714600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:159707400-159719800	Weak transcription	Primary B cells from cord blood	blood
14	chr3:159707400-159719800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:159707600-159719800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:159707800-159713600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:159708000-159711200	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:159708000-159719200	Weak transcription	Brain Hippocampus Middle	brain
19	chr3:159708200-159711600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:159708200-159719000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:159708200-159719400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:159708400-159711800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:159708600-159710600	Active TSS	GM12878-XiMat	blood
24	chr3:159708600-159711800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:159708600-159714000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr3:159708600-159714200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:159708600-159715200	Weak transcription	Spleen	Spleen
28	chr3:159708600-159715400	Weak transcription	Pancreas	Pancrea
29	chr3:159708600-159716400	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:159708800-159710800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr3:159709200-159711600	Strong transcription	Osteobl	bone
32	chr3:159709200-159712200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr3:159709400-159710400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
34	chr3:159709800-159710600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr3:159709800-159710800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr3:159709800-159710800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:159709800-159710800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:159709800-159711200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr3:159709800-159711800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr3:159709800-159723800	Weak transcription	Fetal Muscle Leg	muscle
41	chr3:159710000-159710600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr3:159710000-159710600	Enhancers	NHDF-Ad	bronchial
43	chr3:159710000-159710800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr3:159710000-159711400	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr3:159710000-159711400	Weak transcription	NHLF	lung
46	chr3:159710000-159715000	Weak transcription	Left Ventricle	heart
47	chr3:159710200-159710800	Enhancers	Rectal Smooth Muscle	rectum
48	chr3:159710200-159714200	Weak transcription	Fetal Intestine Large	intestine

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