Variant report

Variant	rs17834684
Chromosome Location	chr2:144636389-144636390
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2593714	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs787155	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs787156	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs787157	0.94[EUR][1000 genomes]
rs787158	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs787162	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144633200-144636400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr2:144633200-144636600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:144634600-144636400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:144634800-144636400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:144635000-144636400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:144635000-144638800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:144635800-144636600	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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