Variant report

Variant	rs787162
Chromosome Location	chr2:144651513-144651514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17834684	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2593714	1.00[AMR][1000 genomes]
rs787150	0.97[EUR][1000 genomes]
rs787155	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs787156	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs787157	0.93[AMR][1000 genomes]
rs787158	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532755	chr2:144631279-145270874	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:144649600-144657200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:144650600-144652400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr2:144650800-144651800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:144650800-144652600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr2:144650800-144652600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr2:144651000-144652200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
7	chr2:144651200-144651600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:144651200-144652600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr2:144651400-144651600	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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