Variant report

Variant	rs17834844
Chromosome Location	chr7:3067066-3067067
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17834873	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441660	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1026476	chr7:2965034-3311344	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv538656	chr7:2965034-3311344	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv464260	chr7:2966138-3315572	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv605874	chr7:2966138-3315572	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1018287	chr7:2967524-3298539	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv538657	chr7:2967524-3298539	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3056800-3067800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:3057600-3068400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:3059800-3067800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:3060400-3067200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr7:3060400-3068200	Weak transcription	Fetal Thymus	thymus
6	chr7:3061800-3067400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr7:3063200-3068000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:3063800-3068000	Strong transcription	Primary B cells from cord blood	blood
9	chr7:3063800-3068400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr7:3064800-3067800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:3065000-3073200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:3065600-3067600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:3065800-3067200	Strong transcription	Thymus	Thymus
14	chr7:3065800-3067800	Weak transcription	Brain Germinal Matrix	brain
15	chr7:3066000-3067400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:3066000-3067600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:3066200-3067400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr7:3066200-3067800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:3066600-3067200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
20	chr7:3066600-3067200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:3066600-3067200	ZNF genes & repeats	GM12878-XiMat	blood
22	chr7:3066600-3067800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:3066600-3068000	Enhancers	Esophagus	oesophagus
24	chr7:3066600-3068000	Enhancers	Pancreas	Pancrea
25	chr7:3066600-3068000	Enhancers	HMEC	breast
26	chr7:3066600-3068400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr7:3066600-3069000	Genic enhancers	Primary B cells from peripheral blood	blood
28	chr7:3066800-3067200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:3066800-3067200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:3066800-3067200	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
31	chr7:3066800-3067200	Enhancers	Fetal Brain Male	brain
32	chr7:3066800-3067200	Enhancers	Right Atrium	heart
33	chr7:3066800-3067200	Flanking Active TSS	NHEK	skin
34	chr7:3066800-3067400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
35	chr7:3066800-3067400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:3066800-3067400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:3066800-3067800	Genic enhancers	Primary T cells fromperipheralblood	blood
38	chr7:3066800-3067800	Enhancers	HUVEC	blood vessel
39	chr7:3066800-3068000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:3066800-3068400	Enhancers	Muscle Satellite Cultured Cells	--
41	chr7:3066800-3068600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr7:3066800-3068600	Enhancers	Aorta	Aorta
43	chr7:3066800-3069000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr7:3067000-3067200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:3067000-3067200	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
46	chr7:3067000-3067200	Active TSS	Rectal Smooth Muscle	rectum
47	chr7:3067000-3067400	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr7:3067000-3067400	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr7:3067000-3067400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
50	chr7:3067000-3067600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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