Variant report

Variant	rs17834873
Chromosome Location	chr7:3067913-3067914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17834844	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62441660	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1026476	chr7:2965034-3311344	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv538656	chr7:2965034-3311344	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv464260	chr7:2966138-3315572	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv605874	chr7:2966138-3315572	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1018287	chr7:2967524-3298539	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv538657	chr7:2967524-3298539	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3057600-3068400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:3060400-3068200	Weak transcription	Fetal Thymus	thymus
3	chr7:3063200-3068000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:3063800-3068000	Strong transcription	Primary B cells from cord blood	blood
5	chr7:3063800-3068400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr7:3065000-3073200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:3066600-3068000	Enhancers	Esophagus	oesophagus
8	chr7:3066600-3068000	Enhancers	Pancreas	Pancrea
9	chr7:3066600-3068000	Enhancers	HMEC	breast
10	chr7:3066600-3068400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:3066600-3069000	Genic enhancers	Primary B cells from peripheral blood	blood
12	chr7:3066800-3068000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:3066800-3068400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:3066800-3068600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:3066800-3068600	Enhancers	Aorta	Aorta
16	chr7:3066800-3069000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr7:3067000-3068200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:3067000-3068800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:3067000-3069000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:3067000-3069000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:3067000-3069200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:3067000-3073200	Weak transcription	Spleen	Spleen
23	chr7:3067200-3068000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:3067200-3068200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:3067200-3068400	Weak transcription	Fetal Brain Male	brain
26	chr7:3067200-3068600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:3067200-3069000	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr7:3067200-3071000	Weak transcription	Thymus	Thymus
29	chr7:3067200-3076600	Weak transcription	GM12878-XiMat	blood
30	chr7:3067400-3068000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
31	chr7:3067400-3068000	Enhancers	Osteobl	bone
32	chr7:3067400-3068200	Enhancers	Colon Smooth Muscle	Colon
33	chr7:3067400-3069000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr7:3067400-3069000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr7:3067400-3069000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr7:3067600-3068000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr7:3067600-3068000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr7:3067600-3068000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:3067600-3068000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr7:3067600-3068000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
41	chr7:3067600-3068000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr7:3067600-3068000	Enhancers	Fetal Lung	lung
43	chr7:3067600-3068200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr7:3067600-3068200	Flanking Active TSS	A549	lung
45	chr7:3067600-3068400	Enhancers	NH-A	brain
46	chr7:3067600-3068800	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr7:3067600-3068800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:3067600-3069000	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr7:3067600-3069000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr7:3067600-3069000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links