Variant report

Variant	rs17835218
Chromosome Location	chr14:69131962-69131963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69131429..69134144-chr14:69139258..69141880,2	MCF-7	breast:
2	chr14:69128890..69132387-chr14:69257388..69259950,3	K562	blood:
3	chr14:69113345..69115393-chr14:69129632..69132510,2	K562	blood:
4	chr14:69130934..69132672-chr14:69136285..69137846,2	MCF-7	breast:
5	chr14:69128588..69133050-chr14:69253079..69257196,5	MCF-7	breast:
6	chr14:69125365..69129113-chr14:69131189..69133426,4	MCF-7	breast:
7	chr14:69130068..69132761-chr14:69260724..69262933,2	MCF-7	breast:
8	chr14:69130772..69132590-chr14:69251342..69252982,2	MCF-7	breast:
9	chr14:69122826..69132436-chr14:69256721..69264610,21	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10135342	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10873215	0.83[MEX][hapmap]
rs1474960	0.83[CEU][hapmap];0.94[MEX][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes]
rs17835244	0.94[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2877496	0.94[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55767067	0.88[AMR][1000 genomes]
rs8006890	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17835218	DCAF5	cis	cerebellum	SCAN
rs17835218	SLC39A9	cis	cerebellum	SCAN

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69120800-69139800	Enhancers	Fetal Muscle Leg	muscle
2	chr14:69122000-69136000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:69122800-69133600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:69122800-69133800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:69123000-69137800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr14:69126600-69133000	Weak transcription	Gastric	stomach
7	chr14:69126600-69135000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:69126600-69136000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:69127000-69132400	Weak transcription	Fetal Thymus	thymus
10	chr14:69127400-69133600	Weak transcription	Pancreas	Pancrea
11	chr14:69128000-69134400	Enhancers	Fetal Heart	heart
12	chr14:69128400-69135200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr14:69128400-69137800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:69128600-69136400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:69128800-69135000	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr14:69129000-69140200	Enhancers	NHDF-Ad	bronchial
17	chr14:69129200-69132800	Enhancers	Brain Cingulate Gyrus	brain
18	chr14:69129200-69133200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:69129200-69137600	Enhancers	NHLF	lung
20	chr14:69129200-69140000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:69129400-69132600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr14:69129800-69140600	Enhancers	Colon Smooth Muscle	Colon
23	chr14:69130000-69133600	Weak transcription	Lung	lung
24	chr14:69130000-69134400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr14:69130000-69135000	Enhancers	Adipose Nuclei	Adipose
26	chr14:69130200-69132600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:69130200-69133800	Enhancers	Ovary	ovary
28	chr14:69130200-69135800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr14:69130400-69133000	Enhancers	HSMM	muscle
30	chr14:69130400-69139600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:69130600-69132000	Enhancers	Duodenum Mucosa	Duodenum
32	chr14:69130600-69135600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr14:69130600-69136000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:69130600-69137800	Enhancers	HSMMtube	muscle
35	chr14:69130600-69140000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr14:69130600-69140000	Enhancers	Rectal Smooth Muscle	rectum
37	chr14:69130800-69132200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:69130800-69134400	Enhancers	Osteobl	bone
39	chr14:69131000-69132200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:69131000-69133000	Enhancers	Fetal Kidney	kidney
41	chr14:69131000-69134800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr14:69131000-69134800	Enhancers	NH-A	brain
43	chr14:69131000-69135200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr14:69131000-69137600	Enhancers	Fetal Lung	lung
45	chr14:69131200-69132000	Enhancers	Fetal Intestine Small	intestine
46	chr14:69131200-69132200	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr14:69131200-69132800	Enhancers	Left Ventricle	heart
48	chr14:69131200-69132800	Enhancers	Right Ventricle	heart
49	chr14:69131200-69133200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr14:69131200-69133400	Enhancers	Small Intestine	intestine

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