Variant report

Variant	rs2877496
Chromosome Location	chr14:69122314-69122315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68937048..68939834-chr14:69120983..69124190,3	MCF-7	breast:
2	chr14:69120949..69124420-chr14:69255481..69258792,4	MCF-7	breast:
3	chr14:69095981..69098144-chr14:69121077..69123082,2	MCF-7	breast:
4	chr14:68740932..68744536-chr14:69121884..69124192,3	MCF-7	breast:
5	chr14:69111300..69112991-chr14:69119803..69122665,2	MCF-7	breast:
6	chr14:69115935..69118979-chr14:69121407..69123459,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction
ENSG00000182185	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10135342	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10873215	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs11158754	0.86[EUR][1000 genomes]
rs11158755	0.86[EUR][1000 genomes]
rs11158756	0.86[EUR][1000 genomes]
rs11629204	0.86[EUR][1000 genomes]
rs1474960	0.88[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17835218	0.94[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17835244	0.84[CEU][hapmap];0.89[AMR][1000 genomes]
rs4899250	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs4902626	0.89[EUR][1000 genomes]
rs55767067	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61987113	0.86[EUR][1000 genomes]
rs61987118	0.88[EUR][1000 genomes]
rs8006890	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1798800	chr14:69114353-69131030	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69109400-69122400	Weak transcription	Primary B cells from cord blood	blood
2	chr14:69115200-69123400	Enhancers	Colon Smooth Muscle	Colon
3	chr14:69115400-69130200	Enhancers	Fetal Stomach	stomach
4	chr14:69116000-69123600	Enhancers	Ovary	ovary
5	chr14:69117000-69124000	Enhancers	Rectal Smooth Muscle	rectum
6	chr14:69117800-69122400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr14:69119000-69122600	Weak transcription	A549	lung
8	chr14:69119000-69125800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:69119600-69125400	Weak transcription	NHDF-Ad	bronchial
10	chr14:69120400-69123400	Enhancers	Spleen	Spleen
11	chr14:69120600-69122600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr14:69120600-69122600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr14:69120600-69123000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr14:69120600-69123600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:69120800-69122800	Enhancers	Brain Cingulate Gyrus	brain
16	chr14:69120800-69123000	Enhancers	Primary hematopoietic stem cells	blood
17	chr14:69120800-69123000	Enhancers	Fetal Heart	heart
18	chr14:69120800-69123600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:69120800-69123800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr14:69120800-69126800	Enhancers	Fetal Lung	lung
21	chr14:69120800-69127000	Enhancers	Fetal Thymus	thymus
22	chr14:69120800-69139800	Enhancers	Fetal Muscle Leg	muscle
23	chr14:69121000-69122800	Enhancers	Right Ventricle	heart
24	chr14:69121000-69123000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:69121000-69123000	Enhancers	Pancreas	Pancrea
26	chr14:69121000-69123200	Enhancers	Primary T cells fromperipheralblood	blood
27	chr14:69121000-69123600	Enhancers	Fetal Intestine Small	intestine
28	chr14:69121000-69123600	Enhancers	Placenta	Placenta
29	chr14:69121000-69123800	Enhancers	Brain Substantia Nigra	brain
30	chr14:69121000-69125800	Enhancers	Fetal Muscle Trunk	muscle
31	chr14:69121200-69122400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr14:69121200-69122400	Enhancers	NHLF	lung
33	chr14:69121200-69122600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr14:69121200-69122800	Enhancers	Left Ventricle	heart
35	chr14:69121200-69122800	Enhancers	Right Atrium	heart
36	chr14:69121200-69122800	Enhancers	Stomach Mucosa	stomach
37	chr14:69121200-69122800	Enhancers	HSMM	muscle
38	chr14:69121200-69122800	Enhancers	HSMMtube	muscle
39	chr14:69121200-69123000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr14:69121200-69123000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr14:69121200-69123000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr14:69121200-69123000	Enhancers	Brain Hippocampus Middle	brain
43	chr14:69121200-69123000	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr14:69121200-69123000	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr14:69121200-69123000	Enhancers	Fetal Brain Female	brain
46	chr14:69121200-69123000	Enhancers	Lung	lung
47	chr14:69121200-69123000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr14:69121200-69123400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr14:69121200-69123600	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr14:69121200-69123600	Enhancers	Fetal Intestine Large	intestine

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